Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Chd3B1AR17 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gm18624-201ENSMUST00000220966 658 ntBASIC13.99□□□□□ -0.17
Chd3B1AR17 AC238811.1-201ENSMUST00000225302 441 ntBASIC13.99□□□□□ -0.17
Chd3B1AR17 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gm45504-201ENSMUST00000211407 2107 ntBASIC13.99□□□□□ -0.17
Chd3B1AR17 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gm10676-201ENSMUST00000098778 3221 ntBASIC13.99□□□□□ -0.17
Chd3B1AR17 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.99□□□□□ -0.17
Chd3B1AR17 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Chd3B1AR17 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.98□□□□□ -0.17
Chd3B1AR17 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC13.98□□□□□ -0.17
Chd3B1AR17 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC13.98□□□□□ -0.17
Chd3B1AR17 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Chd3B1AR17 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Chd3B1AR17 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC13.98□□□□□ -0.17
Chd3B1AR17 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Gm5279-201ENSMUST00000199575 745 ntBASIC13.98□□□□□ -0.17
Chd3B1AR17 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Gm20445-201ENSMUST00000061905 565 ntBASIC13.98□□□□□ -0.17
Chd3B1AR17 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Chd3B1AR17 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC13.98□□□□□ -0.17
Chd3B1AR17 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
Chd3B1AR17 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Chd3B1AR17 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC13.97□□□□□ -0.17
Chd3B1AR17 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC13.97□□□□□ -0.17
Chd3B1AR17 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.97□□□□□ -0.17
Chd3B1AR17 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Chd3B1AR17 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Syt7-205ENSMUST00000224135 1557 ntBASIC13.97□□□□□ -0.17
Chd3B1AR17 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Chd3B1AR17 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC13.97□□□□□ -0.17
Chd3B1AR17 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Chd3B1AR17 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms