Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm2810-201ENSMUST00000118681 990 ntBASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm13365-201ENSMUST00000121188 973 ntBASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm5479-201ENSMUST00000160578 435 ntBASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm18889-201ENSMUST00000174284 929 ntBASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Prpf40aQ9R1C7 Pcgf5-211ENSMUST00000225920 6443 ntBASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 AC166341.4-201ENSMUST00000220625 123 ntBASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Chchd1-203ENSMUST00000224633 557 ntBASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Prpf40aQ9R1C7 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC15.77■□□□□ 0.11
Prpf40aQ9R1C7 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC15.76■□□□□ 0.11
Prpf40aQ9R1C7 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms