Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Gm11355-201ENSMUST00000121120 306 ntBASIC12.84□□□□□ -0.35
Trem1Q9JKE2 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Gm37014-201ENSMUST00000194723 2253 ntBASIC12.84□□□□□ -0.35
Trem1Q9JKE2 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trem1Q9JKE2 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trem1Q9JKE2 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trem1Q9JKE2 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trem1Q9JKE2 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Trem1Q9JKE2 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC12.83□□□□□ -0.35
Trem1Q9JKE2 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 AC139054.1-201ENSMUST00000226898 1598 ntBASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Mir770-201ENSMUST00000103252 94 ntBASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Gm9987-201ENSMUST00000069768 567 ntBASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Gm38376-201ENSMUST00000195493 2253 ntBASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trem1Q9JKE2 AC238940.1-201ENSMUST00000225106 1858 ntBASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Gm7507-201ENSMUST00000183053 1008 ntBASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 AC127302.2-201ENSMUST00000215212 268 ntBASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trem1Q9JKE2 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms