Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm9719-201ENSMUST00000162765 543 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm27618-201ENSMUST00000183671 60 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm27622-201ENSMUST00000183779 60 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm29310-201ENSMUST00000185468 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21825-201ENSMUST00000185728 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm29109-201ENSMUST00000185895 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm17837-201ENSMUST00000186435 985 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21896-201ENSMUST00000186520 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21873-201ENSMUST00000186728 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21794-201ENSMUST00000187056 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21880-201ENSMUST00000187275 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21826-201ENSMUST00000187451 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21198-201ENSMUST00000188393 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21749-201ENSMUST00000189343 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21901-201ENSMUST00000189568 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm29424-201ENSMUST00000189716 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm28599-201ENSMUST00000189838 694 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21867-201ENSMUST00000189917 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm29269-201ENSMUST00000190087 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21722-201ENSMUST00000190153 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm28423-201ENSMUST00000190701 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21899-201ENSMUST00000190745 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21910-201ENSMUST00000191163 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21849-201ENSMUST00000191571 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm28678-201ENSMUST00000191593 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm20910-201ENSMUST00000193268 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm21871-201ENSMUST00000194621 696 ntBASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Gm6222-201ENSMUST00000120787 396 ntBASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Gm25144-201ENSMUST00000179561 110 ntBASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Gm25352-201ENSMUST00000179815 110 ntBASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Gm28630-201ENSMUST00000187806 498 ntBASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Vps28Q9D1C8 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms