Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.08■□□□□ 0
Ddx56Q9D0R4 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.08■□□□□ 0
Ddx56Q9D0R4 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.08■□□□□ 0
Ddx56Q9D0R4 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Gm2756-201ENSMUST00000195851 400 ntBASIC15.07■□□□□ 0
Ddx56Q9D0R4 Gm43125-201ENSMUST00000201724 730 ntBASIC15.07■□□□□ 0
Ddx56Q9D0R4 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Gm37912-201ENSMUST00000191895 3076 ntBASIC15.07■□□□□ 0
Ddx56Q9D0R4 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx56Q9D0R4 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm25287-201ENSMUST00000103846 110 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm22918-201ENSMUST00000103855 110 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm29310-201ENSMUST00000185468 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21825-201ENSMUST00000185728 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm29109-201ENSMUST00000185895 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21896-201ENSMUST00000186520 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21873-201ENSMUST00000186728 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21794-201ENSMUST00000187056 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21880-201ENSMUST00000187275 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21826-201ENSMUST00000187451 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21198-201ENSMUST00000188393 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21749-201ENSMUST00000189343 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21901-201ENSMUST00000189568 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm29424-201ENSMUST00000189716 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm28599-201ENSMUST00000189838 694 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21867-201ENSMUST00000189917 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm29269-201ENSMUST00000190087 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21722-201ENSMUST00000190153 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm28423-201ENSMUST00000190701 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21899-201ENSMUST00000190745 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21910-201ENSMUST00000191163 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21849-201ENSMUST00000191571 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm28678-201ENSMUST00000191593 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm20910-201ENSMUST00000193268 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm21871-201ENSMUST00000194621 696 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm44335-201ENSMUST00000196879 141 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm44297-201ENSMUST00000198304 141 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Gm44346-201ENSMUST00000198851 141 ntBASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx56Q9D0R4 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms