Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.85□□□□□ -0.03
Trim60Q8VI40 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.85□□□□□ -0.03
Trim60Q8VI40 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim60Q8VI40 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim60Q8VI40 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim60Q8VI40 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gm12350-201ENSMUST00000121208 462 ntBASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gm5479-201ENSMUST00000160578 435 ntBASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Trim60Q8VI40 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
Trim60Q8VI40 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.83□□□□□ -0.03
Trim60Q8VI40 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.83□□□□□ -0.04
Trim60Q8VI40 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14.83□□□□□ -0.04
Trim60Q8VI40 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Gm8584-201ENSMUST00000171982 758 ntBASIC14.82□□□□□ -0.04
Trim60Q8VI40 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Gm44771-201ENSMUST00000206975 626 ntBASIC14.82□□□□□ -0.04
Trim60Q8VI40 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim60Q8VI40 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms