Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Gm37411-201ENSMUST00000194180 2282 ntBASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Gm5763-201ENSMUST00000155951 1530 ntBASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Brf1Q8CFK2 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Gm6415-201ENSMUST00000118488 348 ntBASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Sorbs3-204ENSMUST00000227929 2460 ntBASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Brf1Q8CFK2 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Mmp14-206ENSMUST00000225641 3238 ntBASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Ssr1-204ENSMUST00000225319 1610 ntBASIC17.29■□□□□ 0.36
Brf1Q8CFK2 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms