Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Trim40Q3UWA4 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC13.46□□□□□ -0.25
Trim40Q3UWA4 Gm6296-201ENSMUST00000222599 943 ntBASIC13.46□□□□□ -0.25
Trim40Q3UWA4 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Trim40Q3UWA4 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
Trim40Q3UWA4 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Trim40Q3UWA4 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.46□□□□□ -0.25
Trim40Q3UWA4 Grk6-205ENSMUST00000224653 2976 ntBASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trim40Q3UWA4 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Gm38102-201ENSMUST00000192791 1935 ntBASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Trim40Q3UWA4 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Gm8749-201ENSMUST00000117737 331 ntBASIC13.44□□□□□ -0.26
Trim40Q3UWA4 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Gm27646-201ENSMUST00000183989 110 ntBASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Gm37584-201ENSMUST00000193595 1290 ntBASIC13.44□□□□□ -0.26
Trim40Q3UWA4 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 AC160338.1-201ENSMUST00000214232 705 ntBASIC13.44□□□□□ -0.26
Trim40Q3UWA4 CT010506.4-201ENSMUST00000225457 351 ntBASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trim40Q3UWA4 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC13.43□□□□□ -0.26
Trim40Q3UWA4 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms