Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm29310-201ENSMUST00000185468 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21825-201ENSMUST00000185728 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm29109-201ENSMUST00000185895 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21896-201ENSMUST00000186520 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21873-201ENSMUST00000186728 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21794-201ENSMUST00000187056 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21880-201ENSMUST00000187275 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21826-201ENSMUST00000187451 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21198-201ENSMUST00000188393 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21749-201ENSMUST00000189343 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21901-201ENSMUST00000189568 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm29424-201ENSMUST00000189716 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm28599-201ENSMUST00000189838 694 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21867-201ENSMUST00000189917 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm29269-201ENSMUST00000190087 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21722-201ENSMUST00000190153 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm28423-201ENSMUST00000190701 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21899-201ENSMUST00000190745 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21910-201ENSMUST00000191163 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21849-201ENSMUST00000191571 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm28678-201ENSMUST00000191593 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm20910-201ENSMUST00000193268 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Gm21871-201ENSMUST00000194621 696 ntBASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3bQ3ULL6 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Gm13823-201ENSMUST00000119930 345 ntBASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Gm29541-201ENSMUST00000191351 678 ntBASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3bQ3ULL6 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Gm18766-201ENSMUST00000189811 808 ntBASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Upf3bQ3ULL6 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.33■□□□□ 0.05
Upf3bQ3ULL6 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3bQ3ULL6 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Upf3bQ3ULL6 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Gm25948-201ENSMUST00000175334 112 ntBASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms