Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.03■□□□□ -0
Upf3aQ3ULJ3 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC15.02■□□□□ -0
Upf3aQ3ULJ3 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.02■□□□□ -0
Upf3aQ3ULJ3 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Gm44608-201ENSMUST00000206827 855 ntBASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Gm18307-201ENSMUST00000206864 949 ntBASIC15.02■□□□□ -0
Upf3aQ3ULJ3 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Upf3aQ3ULJ3 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC15.02□□□□□ -0.01
Upf3aQ3ULJ3 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 AC153962.4-201ENSMUST00000217878 242 ntBASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 AC156560.2-201ENSMUST00000221232 264 ntBASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Upf3aQ3ULJ3 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms