Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.94□□□□□ -0.18
Col28a1Q2UY11 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Gm38197-201ENSMUST00000192320 2122 ntBASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Gm18489-201ENSMUST00000172565 551 ntBASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Mir3113-201ENSMUST00000175478 76 ntBASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 AC159106.1-201ENSMUST00000224421 690 ntBASIC13.93□□□□□ -0.18
Col28a1Q2UY11 CT010506.4-201ENSMUST00000225457 351 ntBASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col28a1Q2UY11 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Bloc1s5-203ENSMUST00000224902 612 ntBASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Ksr1-207ENSMUST00000226282 5260 ntBASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Gm30238-201ENSMUST00000195528 2603 ntBASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col28a1Q2UY11 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Auts2-212ENSMUST00000178555 309 ntBASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Col28a1Q2UY11 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms