Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.63□□□□□ -0.23
Msx1P13297 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC13.63□□□□□ -0.23
Msx1P13297 Gm8597-201ENSMUST00000191525 1109 ntBASIC13.63□□□□□ -0.23
Msx1P13297 Gm43433-201ENSMUST00000196573 481 ntBASIC13.63□□□□□ -0.23
Msx1P13297 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC13.63□□□□□ -0.23
Msx1P13297 Syt7-204ENSMUST00000223586 1344 ntBASIC13.63□□□□□ -0.23
Msx1P13297 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Msx1P13297 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Msx1P13297 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.62□□□□□ -0.23
Msx1P13297 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Gm13015-201ENSMUST00000118674 204 ntBASIC13.62□□□□□ -0.23
Msx1P13297 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC13.62□□□□□ -0.23
Msx1P13297 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC13.62□□□□□ -0.23
Msx1P13297 Gm27680-201ENSMUST00000184192 160 ntBASIC13.62□□□□□ -0.23
Msx1P13297 Gm27838-201ENSMUST00000184829 128 ntBASIC13.62□□□□□ -0.23
Msx1P13297 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 9330118I20Rik-201ENSMUST00000203390 1066 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 4930405J17Rik-201ENSMUST00000214323 620 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 AC124732.1-201ENSMUST00000221551 910 ntBASIC13.62□□□□□ -0.23
Msx1P13297 Cdk7-205ENSMUST00000225990 1159 ntBASIC13.62□□□□□ -0.23
Msx1P13297 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC13.62□□□□□ -0.23
Msx1P13297 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC13.62□□□□□ -0.23
Msx1P13297 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Msx1P13297 AC148324.1-201ENSMUST00000219034 4240 ntBASIC13.62□□□□□ -0.23
Msx1P13297 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx1P13297 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Gm15222-202ENSMUST00000228667 1726 ntBASIC13.61□□□□□ -0.23
Msx1P13297 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
Msx1P13297 Gm8749-201ENSMUST00000117737 331 ntBASIC13.61□□□□□ -0.23
Msx1P13297 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.61□□□□□ -0.23
Msx1P13297 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.61□□□□□ -0.23
Msx1P13297 Gm14542-201ENSMUST00000118460 1248 ntBASIC13.61□□□□□ -0.23
Msx1P13297 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Gm15483-201ENSMUST00000120338 456 ntBASIC13.61□□□□□ -0.23
Msx1P13297 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Gm38114-201ENSMUST00000191877 1232 ntBASIC13.61□□□□□ -0.23
Msx1P13297 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC13.61□□□□□ -0.23
Msx1P13297 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx1P13297 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC13.61□□□□□ -0.23
Msx1P13297 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms