Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.63□□□□□ -0.23
Lire1P11260 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Lire1P11260 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Lire1P11260 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Lire1P11260 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC13.62□□□□□ -0.23
Lire1P11260 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Lire1P11260 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC13.62□□□□□ -0.23
Lire1P11260 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC13.62□□□□□ -0.23
Lire1P11260 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Lire1P11260 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.62□□□□□ -0.23
Lire1P11260 Gm27494-201ENSMUST00000184735 189 ntBASIC13.62□□□□□ -0.23
Lire1P11260 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC13.62□□□□□ -0.23
Lire1P11260 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC13.62□□□□□ -0.23
Lire1P11260 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Lire1P11260 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.62□□□□□ -0.23
Lire1P11260 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lire1P11260 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.62□□□□□ -0.23
Lire1P11260 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Lire1P11260 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Lire1P11260 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC13.61□□□□□ -0.23
Lire1P11260 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.61□□□□□ -0.23
Lire1P11260 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Lire1P11260 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Lire1P11260 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Lire1P11260 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.61□□□□□ -0.23
Lire1P11260 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.61□□□□□ -0.23
Lire1P11260 Gm19164-201ENSMUST00000210667 640 ntBASIC13.61□□□□□ -0.23
Lire1P11260 AC124549.3-201ENSMUST00000225541 367 ntBASIC13.61□□□□□ -0.23
Lire1P11260 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Lire1P11260 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Lire1P11260 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Lire1P11260 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Lire1P11260 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lire1P11260 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Lire1P11260 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC13.6□□□□□ -0.23
Lire1P11260 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Lire1P11260 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC13.6□□□□□ -0.23
Lire1P11260 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lire1P11260 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Lire1P11260 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
Lire1P11260 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.6□□□□□ -0.23
Lire1P11260 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Lire1P11260 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
Lire1P11260 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms