Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
Col1a1P11087 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC16.58■□□□□ 0.24
Col1a1P11087 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC16.58■□□□□ 0.24
Col1a1P11087 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC16.58■□□□□ 0.24
Col1a1P11087 Gm43818-201ENSMUST00000200605 466 ntBASIC16.58■□□□□ 0.24
Col1a1P11087 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Col1a1P11087 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC16.58■□□□□ 0.24
Col1a1P11087 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC16.58■□□□□ 0.24
Col1a1P11087 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.57■□□□□ 0.24
Col1a1P11087 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC16.57■□□□□ 0.24
Col1a1P11087 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Col1a1P11087 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC16.57■□□□□ 0.24
Col1a1P11087 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC16.57■□□□□ 0.24
Col1a1P11087 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC16.57■□□□□ 0.24
Col1a1P11087 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Col1a1P11087 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC16.57■□□□□ 0.24
Col1a1P11087 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Col1a1P11087 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col1a1P11087 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 AC159196.2-201ENSMUST00000224082 1622 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Gm14730-201ENSMUST00000122378 1045 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Gm6152-201ENSMUST00000151704 340 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Gm2639-201ENSMUST00000156881 1297 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Gm22331-201ENSMUST00000158066 136 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Col1a1P11087 Gm7498-201ENSMUST00000203282 1084 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
Col1a1P11087 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 CU024892.2-201ENSMUST00000224608 832 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Camk2g-217ENSMUST00000226630 1937 ntBASIC16.56■□□□□ 0.24
Col1a1P11087 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col1a1P11087 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Gm8213-201ENSMUST00000118191 441 ntBASIC16.55■□□□□ 0.24
Col1a1P11087 Gm14723-201ENSMUST00000118686 215 ntBASIC16.55■□□□□ 0.24
Col1a1P11087 Gm16177-201ENSMUST00000120728 718 ntBASIC16.55■□□□□ 0.24
Col1a1P11087 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Proscos-202ENSMUST00000178990 666 ntBASIC16.55■□□□□ 0.24
Col1a1P11087 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC16.55■□□□□ 0.24
Col1a1P11087 Mir497b-201ENSMUST00000093601 125 ntBASIC16.55■□□□□ 0.24
Col1a1P11087 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC16.55■□□□□ 0.24
Col1a1P11087 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC16.55■□□□□ 0.24
Col1a1P11087 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col1a1P11087 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col1a1P11087 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.55■□□□□ 0.24
Col1a1P11087 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col1a1P11087 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms