Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC11.19□□□□□ -0.62
Hoxd3P09027 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Gm5566-201ENSMUST00000116118 459 ntBASIC11.19□□□□□ -0.62
Hoxd3P09027 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Gm7063-201ENSMUST00000186840 981 ntBASIC11.19□□□□□ -0.62
Hoxd3P09027 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Gm37230-201ENSMUST00000194491 818 ntBASIC11.19□□□□□ -0.62
Hoxd3P09027 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Gm35638-201ENSMUST00000220724 652 ntBASIC11.19□□□□□ -0.62
Hoxd3P09027 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Hoxd3P09027 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Hoxd3P09027 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Hoxd3P09027 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm6222-201ENSMUST00000120787 396 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm14767-201ENSMUST00000121559 586 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Hoxd3P09027 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm29310-201ENSMUST00000185468 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21825-201ENSMUST00000185728 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm29109-201ENSMUST00000185895 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21896-201ENSMUST00000186520 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21873-201ENSMUST00000186728 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21794-201ENSMUST00000187056 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21880-201ENSMUST00000187275 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21826-201ENSMUST00000187451 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21198-201ENSMUST00000188393 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21749-201ENSMUST00000189343 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21901-201ENSMUST00000189568 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm29424-201ENSMUST00000189716 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm28599-201ENSMUST00000189838 694 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21867-201ENSMUST00000189917 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm29269-201ENSMUST00000190087 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21722-201ENSMUST00000190153 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm28423-201ENSMUST00000190701 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21899-201ENSMUST00000190745 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21910-201ENSMUST00000191163 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21849-201ENSMUST00000191571 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm28678-201ENSMUST00000191593 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm20910-201ENSMUST00000193268 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm21871-201ENSMUST00000194621 696 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm36377-201ENSMUST00000220833 757 ntTSL 2 BASIC11.18□□□□□ -0.62
Hoxd3P09027 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms