Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 Gm8131-201ENSMUST00000213783 1570 ntBASIC16.92■□□□□ 0.3
Col3a1P08121 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.92■□□□□ 0.3
Col3a1P08121 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Col3a1P08121 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.92■□□□□ 0.3
Col3a1P08121 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
Col3a1P08121 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC16.92■□□□□ 0.3
Col3a1P08121 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 AC110817.1-201ENSMUST00000225706 605 ntBASIC16.92■□□□□ 0.3
Col3a1P08121 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Gm13859-201ENSMUST00000119936 1423 ntBASIC16.91■□□□□ 0.3
Col3a1P08121 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
Col3a1P08121 Gm37015-201ENSMUST00000192763 1521 ntBASIC16.91■□□□□ 0.3
Col3a1P08121 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.91■□□□□ 0.3
Col3a1P08121 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col3a1P08121 Gm9347-201ENSMUST00000211473 1607 ntBASIC16.91■□□□□ 0.3
Col3a1P08121 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC16.91■□□□□ 0.3
Col3a1P08121 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC16.91■□□□□ 0.3
Col3a1P08121 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Gm6266-201ENSMUST00000203844 806 ntBASIC16.91■□□□□ 0.3
Col3a1P08121 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC16.91■□□□□ 0.3
Col3a1P08121 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.91■□□□□ 0.3
Col3a1P08121 AC125117.1-201ENSMUST00000228121 468 ntBASIC16.91■□□□□ 0.3
Col3a1P08121 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col3a1P08121 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col3a1P08121 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.9■□□□□ 0.3
Col3a1P08121 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
Col3a1P08121 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.9■□□□□ 0.3
Col3a1P08121 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.9■□□□□ 0.3
Col3a1P08121 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC16.9■□□□□ 0.3
Col3a1P08121 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC16.9■□□□□ 0.3
Col3a1P08121 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
Col3a1P08121 Gm29741-201ENSMUST00000192667 421 ntBASIC16.9■□□□□ 0.3
Col3a1P08121 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Col3a1P08121 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
Col3a1P08121 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col3a1P08121 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Col3a1P08121 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Col3a1P08121 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Gm12416-201ENSMUST00000120911 1008 ntBASIC16.89■□□□□ 0.29
Col3a1P08121 Mir1894-201ENSMUST00000122802 81 ntBASIC16.89■□□□□ 0.29
Col3a1P08121 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.89■□□□□ 0.29
Col3a1P08121 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC16.89■□□□□ 0.29
Col3a1P08121 Gm38319-201ENSMUST00000194537 1266 ntBASIC16.89■□□□□ 0.29
Col3a1P08121 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.89■□□□□ 0.29
Col3a1P08121 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Col3a1P08121 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.89■□□□□ 0.29
Col3a1P08121 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.89■□□□□ 0.29
Col3a1P08121 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col3a1P08121 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms