Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.01□□□□□ -0.33
Lmx1bO88609 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.01□□□□□ -0.33
Lmx1bO88609 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC13□□□□□ -0.33
Lmx1bO88609 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Lmx1bO88609 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Lmx1bO88609 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
Lmx1bO88609 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC13□□□□□ -0.33
Lmx1bO88609 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC13□□□□□ -0.33
Lmx1bO88609 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13□□□□□ -0.33
Lmx1bO88609 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Gm9719-201ENSMUST00000162765 543 ntBASIC13□□□□□ -0.33
Lmx1bO88609 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13□□□□□ -0.33
Lmx1bO88609 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Lmx1bO88609 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lmx1bO88609 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Lmx1bO88609 AC162938.1-201ENSMUST00000213140 2323 ntBASIC12.99□□□□□ -0.33
Lmx1bO88609 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Gm24543-201ENSMUST00000103867 82 ntBASIC12.99□□□□□ -0.33
Lmx1bO88609 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Gm8749-201ENSMUST00000117737 331 ntBASIC12.99□□□□□ -0.33
Lmx1bO88609 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Gm9726-201ENSMUST00000180321 678 ntBASIC12.99□□□□□ -0.33
Lmx1bO88609 Mir8102-201ENSMUST00000184148 139 ntBASIC12.99□□□□□ -0.33
Lmx1bO88609 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Gm9063-201ENSMUST00000223299 582 ntBASIC12.99□□□□□ -0.33
Lmx1bO88609 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.99□□□□□ -0.33
Lmx1bO88609 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Lmx1bO88609 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lmx1bO88609 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC12.98□□□□□ -0.33
Lmx1bO88609 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC12.98□□□□□ -0.33
Lmx1bO88609 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lmx1bO88609 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lmx1bO88609 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms