Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Gm7901-201ENSMUST00000120430 1597 ntBASIC11.88□□□□□ -0.51
Hmgb3O54879 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Gm8258-201ENSMUST00000055593 1449 ntBASIC11.88□□□□□ -0.51
Hmgb3O54879 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Mir3081-201ENSMUST00000175305 84 ntBASIC11.88□□□□□ -0.51
Hmgb3O54879 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Gm42471-201ENSMUST00000201457 1865 ntBASIC11.88□□□□□ -0.51
Hmgb3O54879 Gm26513-201ENSMUST00000181802 2489 ntBASIC11.88□□□□□ -0.51
Hmgb3O54879 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Hmgb3O54879 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Hmgb3O54879 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC11.87□□□□□ -0.51
Hmgb3O54879 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Gm27867-201ENSMUST00000184778 125 ntBASIC11.87□□□□□ -0.51
Hmgb3O54879 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Hmgb3O54879 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
Hmgb3O54879 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC11.86□□□□□ -0.51
Hmgb3O54879 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Hmgb3O54879 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC11.86□□□□□ -0.51
Hmgb3O54879 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Hmgb3O54879 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC11.86□□□□□ -0.51
Hmgb3O54879 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Hmgb3O54879 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Hmgb3O54879 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Gm43767-201ENSMUST00000198933 381 ntBASIC11.86□□□□□ -0.51
Hmgb3O54879 AC093926.2-201ENSMUST00000214468 1228 ntBASIC11.86□□□□□ -0.51
Hmgb3O54879 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Hmgb3O54879 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 106.1 ms