Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Nr1i3O35627 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.39■□□□□ 0.05
Nr1i3O35627 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Nr1i3O35627 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Mir3113-201ENSMUST00000175478 76 ntBASIC15.39■□□□□ 0.05
Nr1i3O35627 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Nr1i3O35627 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Nr1i3O35627 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Gm44608-201ENSMUST00000206827 855 ntBASIC15.38■□□□□ 0.05
Nr1i3O35627 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.38■□□□□ 0.05
Nr1i3O35627 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Nr1i3O35627 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Nr1i3O35627 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Gm27741-201ENSMUST00000185060 237 ntBASIC15.37■□□□□ 0.05
Nr1i3O35627 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Gm45612-201ENSMUST00000211320 160 ntBASIC15.37■□□□□ 0.05
Nr1i3O35627 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
Nr1i3O35627 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1i3O35627 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms