Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Col6a4A2AX52 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.08□□□□□ -0.48
Col6a4A2AX52 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.08□□□□□ -0.48
Col6a4A2AX52 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col6a4A2AX52 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.07□□□□□ -0.48
Col6a4A2AX52 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.07□□□□□ -0.48
Col6a4A2AX52 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.07□□□□□ -0.48
Col6a4A2AX52 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col6a4A2AX52 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Snora78-201ENSMUST00000158630 128 ntBASIC12.06□□□□□ -0.48
Col6a4A2AX52 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.06□□□□□ -0.48
Col6a4A2AX52 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Gm10012-201ENSMUST00000078252 192 ntBASIC12.06□□□□□ -0.48
Col6a4A2AX52 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Mir7654-201ENSMUST00000185082 70 ntBASIC12.06□□□□□ -0.48
Col6a4A2AX52 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.06□□□□□ -0.48
Col6a4A2AX52 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Col6a4A2AX52 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col6a4A2AX52 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col6a4A2AX52 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col6a4A2AX52 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Col6a4A2AX52 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC12.05□□□□□ -0.48
Col6a4A2AX52 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col6a4A2AX52 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col6a4A2AX52 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.05□□□□□ -0.48
Col6a4A2AX52 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms