Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Smc1aQ9CU62 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Smc1aQ9CU62 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Smc1aQ9CU62 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Smc1aQ9CU62 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Gm2272-201ENSMUST00000194903 582 ntBASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Gm7774-201ENSMUST00000200064 533 ntBASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC16.08■□□□□ 0.16
Smc1aQ9CU62 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gm23547-201ENSMUST00000158210 271 ntBASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC16.07■□□□□ 0.16
Smc1aQ9CU62 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gm27430-201ENSMUST00000184585 107 ntBASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gm44333-201ENSMUST00000197168 107 ntBASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gm18057-201ENSMUST00000208220 503 ntBASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gm5186-201ENSMUST00000218781 920 ntBASIC16.07■□□□□ 0.16
Smc1aQ9CU62 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Smc1aQ9CU62 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Gm14722-201ENSMUST00000118943 689 ntBASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Gm10253-201ENSMUST00000194270 940 ntBASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms