Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC16.37■□□□□ 0.21
Trim11Q99PQ2 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Gm10275-202ENSMUST00000168697 495 ntBASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Gm20553-201ENSMUST00000204205 844 ntBASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 AC102291.3-201ENSMUST00000226566 405 ntBASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Gm10275-201ENSMUST00000092620 635 ntBASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim11Q99PQ2 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Gm11779-201ENSMUST00000118541 368 ntBASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trim11Q99PQ2 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Gm14494-201ENSMUST00000118786 435 ntBASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Gm18737-201ENSMUST00000173594 937 ntBASIC16.35■□□□□ 0.21
Trim11Q99PQ2 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trim11Q99PQ2 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim11Q99PQ2 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms