Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
Vps53Q8CCB4 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps53Q8CCB4 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps53Q8CCB4 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Trav13-3-201ENSMUST00000117226 336 ntBASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Vps53Q8CCB4 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vps53Q8CCB4 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Gm6973-201ENSMUST00000117080 721 ntBASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Gm27437-201ENSMUST00000183429 107 ntBASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC16.7■□□□□ 0.26
Vps53Q8CCB4 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Vps53Q8CCB4 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vps53Q8CCB4 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vps53Q8CCB4 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vps53Q8CCB4 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms