Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC10.65□□□□□ -0.7
Foxc1Q61572 Gm15427-201ENSMUST00000117288 531 ntBASIC10.65□□□□□ -0.7
Foxc1Q61572 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC10.65□□□□□ -0.7
Foxc1Q61572 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Gm26812-202ENSMUST00000181776 599 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 C730036E19Rik-201ENSMUST00000188305 1102 ntTSL 5 BASIC10.65□□□□□ -0.7
Foxc1Q61572 Gm17968-201ENSMUST00000194902 784 ntBASIC10.65□□□□□ -0.7
Foxc1Q61572 Gm45747-201ENSMUST00000212203 999 ntBASIC10.65□□□□□ -0.7
Foxc1Q61572 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC10.65□□□□□ -0.7
Foxc1Q61572 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Mxra8os-201ENSMUST00000097740 687 ntBASIC10.65□□□□□ -0.7
Foxc1Q61572 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC10.65□□□□□ -0.7
Foxc1Q61572 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Foxc1Q61572 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Foxc1Q61572 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC10.65□□□□□ -0.71
Foxc1Q61572 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
Foxc1Q61572 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Foxc1Q61572 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Foxc1Q61572 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Foxc1Q61572 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC10.65□□□□□ -0.71
Foxc1Q61572 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC10.64□□□□□ -0.71
Foxc1Q61572 Gm37437-201ENSMUST00000194451 1937 ntBASIC10.64□□□□□ -0.71
Foxc1Q61572 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Gm25318-201ENSMUST00000122554 314 ntBASIC10.64□□□□□ -0.71
Foxc1Q61572 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC10.64□□□□□ -0.71
Foxc1Q61572 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Auts2-212ENSMUST00000178555 309 ntBASIC10.64□□□□□ -0.71
Foxc1Q61572 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC10.64□□□□□ -0.71
Foxc1Q61572 AC159114.1-201ENSMUST00000220349 266 ntBASIC10.64□□□□□ -0.71
Foxc1Q61572 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC10.64□□□□□ -0.71
Foxc1Q61572 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Foxc1Q61572 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Gm42901-201ENSMUST00000197735 3171 ntBASIC10.64□□□□□ -0.71
Foxc1Q61572 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC10.64□□□□□ -0.71
Foxc1Q61572 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Foxc1Q61572 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Foxc1Q61572 Gm17540-201ENSMUST00000181617 1528 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC10.63□□□□□ -0.71
Foxc1Q61572 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC10.63□□□□□ -0.71
Foxc1Q61572 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Foxc1Q61572 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Gm16198-201ENSMUST00000118766 670 ntBASIC10.63□□□□□ -0.71
Foxc1Q61572 Gm15593-201ENSMUST00000122085 1008 ntBASIC10.63□□□□□ -0.71
Foxc1Q61572 Rpa3-201ENSMUST00000012627 670 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Gm17066-202ENSMUST00000165350 1113 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Gm3344-201ENSMUST00000169610 603 ntBASIC10.63□□□□□ -0.71
Foxc1Q61572 Gm20854-201ENSMUST00000178889 1002 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Foxc1Q61572 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Foxc1Q61572 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms