Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Gm15824-201ENSMUST00000119516 955 ntBASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 AC155252.1-201ENSMUST00000226462 1208 ntBASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Upf3aQ3ULJ3 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Gm5425-201ENSMUST00000214125 459 ntBASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Gm17795-201ENSMUST00000214505 757 ntBASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Gm16011-201ENSMUST00000121567 2662 ntBASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Upf3aQ3ULJ3 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Upf3aQ3ULJ3 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 AC125350.2-201ENSMUST00000224737 727 ntBASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.05■□□□□ -0
Upf3aQ3ULJ3 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Gm42690-201ENSMUST00000197921 1836 ntBASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 AC150560.1-201ENSMUST00000227731 1187 ntBASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC15.04■□□□□ -0
Upf3aQ3ULJ3 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms