Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Shox2P70390 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Shox2P70390 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Shox2P70390 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.21□□□□□ -0.13
Shox2P70390 Gm5712-201ENSMUST00000199748 1043 ntBASIC14.21□□□□□ -0.13
Shox2P70390 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Shox2P70390 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Shox2P70390 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Shox2P70390 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shox2P70390 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shox2P70390 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shox2P70390 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shox2P70390 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Shox2P70390 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Shox2P70390 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14.2□□□□□ -0.14
Shox2P70390 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Gm13836-201ENSMUST00000121159 501 ntBASIC14.2□□□□□ -0.14
Shox2P70390 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.2□□□□□ -0.14
Shox2P70390 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC14.2□□□□□ -0.14
Shox2P70390 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Gm10812-201ENSMUST00000099864 546 ntBASIC14.2□□□□□ -0.14
Shox2P70390 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.2□□□□□ -0.14
Shox2P70390 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Shox2P70390 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Shox2P70390 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Shox2P70390 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.19□□□□□ -0.14
Shox2P70390 Gm8097-201ENSMUST00000117903 829 ntBASIC14.19□□□□□ -0.14
Shox2P70390 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC14.19□□□□□ -0.14
Shox2P70390 Gm18489-201ENSMUST00000172565 551 ntBASIC14.19□□□□□ -0.14
Shox2P70390 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Shox2P70390 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC14.19□□□□□ -0.14
Shox2P70390 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Shox2P70390 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Shox2P70390 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Shox2P70390 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Shox2P70390 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Shox2P70390 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC14.18□□□□□ -0.14
Shox2P70390 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.18□□□□□ -0.14
Shox2P70390 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Shox2P70390 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Shox2P70390 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Shox2P70390 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms