Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdh11P55288 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdh11P55288 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdh11P55288 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdh11P55288 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdh11P55288 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdh11P55288 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.12□□□□□ -0.31
Cdh11P55288 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.12□□□□□ -0.31
Cdh11P55288 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Cdh11P55288 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cdh11P55288 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
Cdh11P55288 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdh11P55288 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdh11P55288 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.12□□□□□ -0.31
Cdh11P55288 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.12□□□□□ -0.31
Cdh11P55288 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC13.12□□□□□ -0.31
Cdh11P55288 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cdh11P55288 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cdh11P55288 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Cdh11P55288 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdh11P55288 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.11□□□□□ -0.31
Cdh11P55288 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Gm13597-201ENSMUST00000121239 375 ntBASIC13.11□□□□□ -0.31
Cdh11P55288 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Gm26308-201ENSMUST00000157768 69 ntBASIC13.11□□□□□ -0.31
Cdh11P55288 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Cdh11P55288 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Cdh11P55288 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdh11P55288 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdh11P55288 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Cdh11P55288 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.1□□□□□ -0.31
Cdh11P55288 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 AC166491.1-201ENSMUST00000227053 2308 ntBASIC13.1□□□□□ -0.31
Cdh11P55288 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC13.1□□□□□ -0.31
Cdh11P55288 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC13.1□□□□□ -0.31
Cdh11P55288 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.1□□□□□ -0.31
Cdh11P55288 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Gm44492-201ENSMUST00000197012 141 ntBASIC13.1□□□□□ -0.31
Cdh11P55288 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Cdh11P55288 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.1□□□□□ -0.31
Cdh11P55288 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.1□□□□□ -0.31
Cdh11P55288 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdh11P55288 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms