Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Cux1P53564 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cux1P53564 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Cux1P53564 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cux1P53564 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC21.75■■□□□ 1.07
Cux1P53564 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC21.75■■□□□ 1.07
Cux1P53564 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Cux1P53564 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Cux1P53564 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC21.75■■□□□ 1.07
Cux1P53564 Gm45841-201ENSMUST00000207700 164 ntBASIC21.75■■□□□ 1.07
Cux1P53564 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC21.75■■□□□ 1.07
Cux1P53564 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cux1P53564 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cux1P53564 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Cux1P53564 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Gm9347-201ENSMUST00000211473 1607 ntBASIC21.74■■□□□ 1.07
Cux1P53564 Gm9954-202ENSMUST00000198686 4725 ntBASIC21.74■■□□□ 1.07
Cux1P53564 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC21.74■■□□□ 1.07
Cux1P53564 Gm7553-201ENSMUST00000185805 1426 ntBASIC21.74■■□□□ 1.07
Cux1P53564 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Cux1P53564 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Cux1P53564 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Gm38223-201ENSMUST00000194484 695 ntBASIC21.74■■□□□ 1.07
Cux1P53564 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC21.74■■□□□ 1.07
Cux1P53564 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC21.74■■□□□ 1.07
Cux1P53564 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cux1P53564 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC21.73■■□□□ 1.07
Cux1P53564 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC21.73■■□□□ 1.07
Cux1P53564 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC21.73■■□□□ 1.07
Cux1P53564 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Cux1P53564 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Cux1P53564 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC21.73■■□□□ 1.07
Cux1P53564 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC21.73■■□□□ 1.07
Cux1P53564 Gm5069-202ENSMUST00000192714 1011 ntBASIC21.73■■□□□ 1.07
Cux1P53564 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC21.73■■□□□ 1.07
Cux1P53564 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC21.73■■□□□ 1.07
Cux1P53564 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC21.73■■□□□ 1.07
Cux1P53564 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Gm10584-201ENSMUST00000207036 2628 ntBASIC21.73■■□□□ 1.07
Cux1P53564 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cux1P53564 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Gm16177-201ENSMUST00000120728 718 ntBASIC21.72■■□□□ 1.07
Cux1P53564 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC21.72■■□□□ 1.07
Cux1P53564 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Gm9257-201ENSMUST00000221254 232 ntBASIC21.72■■□□□ 1.07
Cux1P53564 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
Cux1P53564 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 AC126549.2-201ENSMUST00000223997 1976 ntBASIC21.72■■□□□ 1.07
Cux1P53564 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cux1P53564 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Cux1P53564 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Gm27331-201ENSMUST00000183705 60 ntBASIC21.71■■□□□ 1.07
Cux1P53564 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC21.71■■□□□ 1.07
Cux1P53564 Gm43179-201ENSMUST00000198797 275 ntBASIC21.71■■□□□ 1.07
Cux1P53564 Gm38671-201ENSMUST00000200573 130 ntBASIC21.71■■□□□ 1.07
Cux1P53564 AC073947.2-201ENSMUST00000215888 1130 ntBASIC21.71■■□□□ 1.07
Cux1P53564 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Cux1P53564 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.71■■□□□ 1.07
Cux1P53564 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC21.71■■□□□ 1.07
Cux1P53564 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cux1P53564 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC21.7■■□□□ 1.07
Cux1P53564 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
Cux1P53564 Gm27572-201ENSMUST00000183702 255 ntBASIC21.7■■□□□ 1.07
Cux1P53564 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC21.7■■□□□ 1.07
Cux1P53564 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms