Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Msx1P13297 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Msx1P13297 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Gm28630-201ENSMUST00000187806 498 ntBASIC13.65□□□□□ -0.22
Msx1P13297 Gm29541-201ENSMUST00000191351 678 ntBASIC13.65□□□□□ -0.22
Msx1P13297 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC13.65□□□□□ -0.22
Msx1P13297 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 AC132863.2-201ENSMUST00000226643 799 ntBASIC13.65□□□□□ -0.22
Msx1P13297 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC13.65□□□□□ -0.22
Msx1P13297 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 Gm37736-201ENSMUST00000193564 2802 ntBASIC13.65□□□□□ -0.22
Msx1P13297 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Msx1P13297 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Msx1P13297 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msx1P13297 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Msx1P13297 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.64□□□□□ -0.23
Msx1P13297 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Fbxl12-205ENSMUST00000140702 1555 ntBASIC13.64□□□□□ -0.23
Msx1P13297 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Gm45574-201ENSMUST00000210921 331 ntBASIC13.64□□□□□ -0.23
Msx1P13297 Gm9063-201ENSMUST00000223299 582 ntBASIC13.64□□□□□ -0.23
Msx1P13297 AC132467.2-202ENSMUST00000227726 559 ntBASIC13.64□□□□□ -0.23
Msx1P13297 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Olfr1212-201ENSMUST00000055895 936 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Msx1P13297 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Carlr-201ENSMUST00000181515 2574 ntBASIC13.64□□□□□ -0.23
Msx1P13297 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.64□□□□□ -0.23
Msx1P13297 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msx1P13297 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Msx1P13297 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Gm3365-201ENSMUST00000216296 1480 ntBASIC13.63□□□□□ -0.23
Msx1P13297 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Msx1P13297 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Msx1P13297 Gm12490-201ENSMUST00000120255 560 ntBASIC13.63□□□□□ -0.23
Msx1P13297 Gm15487-201ENSMUST00000122373 465 ntBASIC13.63□□□□□ -0.23
Msx1P13297 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 76.7 ms