Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Col1a1P11087 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC16.61■□□□□ 0.25
Col1a1P11087 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Col1a1P11087 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Col1a1P11087 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC16.61■□□□□ 0.25
Col1a1P11087 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Col1a1P11087 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Col1a1P11087 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Col1a1P11087 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Col1a1P11087 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC16.61■□□□□ 0.25
Col1a1P11087 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC16.61■□□□□ 0.25
Col1a1P11087 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Col1a1P11087 Gm8565-201ENSMUST00000183259 1014 ntBASIC16.61■□□□□ 0.25
Col1a1P11087 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC16.61■□□□□ 0.25
Col1a1P11087 Gm5069-202ENSMUST00000192714 1011 ntBASIC16.61■□□□□ 0.25
Col1a1P11087 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col1a1P11087 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Col1a1P11087 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.6■□□□□ 0.25
Col1a1P11087 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC16.6■□□□□ 0.25
Col1a1P11087 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC16.6■□□□□ 0.25
Col1a1P11087 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC16.6■□□□□ 0.25
Col1a1P11087 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Gm4971-201ENSMUST00000205991 1108 ntBASIC16.6■□□□□ 0.25
Col1a1P11087 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Col1a1P11087 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col1a1P11087 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.6■□□□□ 0.25
Col1a1P11087 Efs-202ENSMUST00000227037 2540 ntBASIC16.6■□□□□ 0.25
Col1a1P11087 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.59■□□□□ 0.25
Col1a1P11087 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Gm9109-201ENSMUST00000120254 1405 ntBASIC16.59■□□□□ 0.25
Col1a1P11087 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC16.59■□□□□ 0.25
Col1a1P11087 CT009713.10-202ENSMUST00000225734 696 ntBASIC16.59■□□□□ 0.25
Col1a1P11087 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC16.59■□□□□ 0.25
Col1a1P11087 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Ankra2-208ENSMUST00000226100 1476 ntBASIC16.59■□□□□ 0.25
Col1a1P11087 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 AC168058.1-201ENSMUST00000219521 2282 ntBASIC16.59■□□□□ 0.25
Col1a1P11087 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col1a1P11087 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col1a1P11087 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col1a1P11087 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col1a1P11087 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Col1a1P11087 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col1a1P11087 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC16.58■□□□□ 0.24
Col1a1P11087 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col1a1P11087 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms