Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Hoxd3P09027 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC11.21□□□□□ -0.61
Hoxd3P09027 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm13223-201ENSMUST00000118609 747 ntBASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm13453-201ENSMUST00000118708 357 ntBASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 9030204H09Rik-201ENSMUST00000139455 653 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm17555-201ENSMUST00000164042 1113 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm28630-201ENSMUST00000187806 498 ntBASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC11.21□□□□□ -0.61
Hoxd3P09027 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm6888-201ENSMUST00000221983 706 ntBASIC11.21□□□□□ -0.61
Hoxd3P09027 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC11.21□□□□□ -0.61
Hoxd3P09027 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hoxd3P09027 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
Hoxd3P09027 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC11.21□□□□□ -0.62
Hoxd3P09027 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC11.21□□□□□ -0.62
Hoxd3P09027 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC11.21□□□□□ -0.62
Hoxd3P09027 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Hoxd3P09027 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC11.2□□□□□ -0.62
Hoxd3P09027 2810403D21Rik-206ENSMUST00000151166 1107 ntTSL 3 BASIC11.2□□□□□ -0.62
Hoxd3P09027 2810403D21Rik-207ENSMUST00000152089 852 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gm9719-201ENSMUST00000162765 543 ntBASIC11.2□□□□□ -0.62
Hoxd3P09027 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gm27227-201ENSMUST00000183413 633 ntTSL 3 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gm38294-201ENSMUST00000192831 381 ntBASIC11.2□□□□□ -0.62
Hoxd3P09027 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 AC090659.2-201ENSMUST00000225378 1186 ntBASIC11.2□□□□□ -0.62
Hoxd3P09027 Rbfox2-208ENSMUST00000227930 1218 ntBASIC11.2□□□□□ -0.62
Hoxd3P09027 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Hoxd3P09027 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC11.2□□□□□ -0.62
Hoxd3P09027 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC11.2□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms