Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC16.96■□□□□ 0.3
Col3a1P08121 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col3a1P08121 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
Col3a1P08121 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC16.95■□□□□ 0.3
Col3a1P08121 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC16.95■□□□□ 0.3
Col3a1P08121 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Gm13829-201ENSMUST00000119600 138 ntBASIC16.95■□□□□ 0.3
Col3a1P08121 Gm17150-201ENSMUST00000165577 381 ntBASIC16.95■□□□□ 0.3
Col3a1P08121 Gm27772-201ENSMUST00000184900 187 ntBASIC16.95■□□□□ 0.3
Col3a1P08121 AC150560.1-201ENSMUST00000227731 1187 ntBASIC16.95■□□□□ 0.3
Col3a1P08121 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.95■□□□□ 0.3
Col3a1P08121 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col3a1P08121 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.95■□□□□ 0.3
Col3a1P08121 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.95■□□□□ 0.3
Col3a1P08121 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC16.95■□□□□ 0.3
Col3a1P08121 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col3a1P08121 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.94■□□□□ 0.3
Col3a1P08121 Gm43094-201ENSMUST00000196549 921 ntBASIC16.94■□□□□ 0.3
Col3a1P08121 CT030704.2-201ENSMUST00000228887 494 ntBASIC16.94■□□□□ 0.3
Col3a1P08121 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Col3a1P08121 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col3a1P08121 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC16.94■□□□□ 0.3
Col3a1P08121 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Col3a1P08121 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col3a1P08121 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col3a1P08121 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC16.94■□□□□ 0.3
Col3a1P08121 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col3a1P08121 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Gm7446-201ENSMUST00000221035 1240 ntBASIC16.93■□□□□ 0.3
Col3a1P08121 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Col3a1P08121 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 AC192088.1-201ENSMUST00000227561 301 ntBASIC16.93■□□□□ 0.3
Col3a1P08121 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col3a1P08121 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Gm37736-201ENSMUST00000193564 2802 ntBASIC16.92■□□□□ 0.3
Col3a1P08121 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col3a1P08121 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col3a1P08121 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms