Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm27306-201ENSMUST00000183970 107 ntBASIC13.04□□□□□ -0.32
Lmx1bO88609 Gm2451-201ENSMUST00000199447 999 ntBASIC13.04□□□□□ -0.32
Lmx1bO88609 Gm10290-201ENSMUST00000200451 999 ntBASIC13.04□□□□□ -0.32
Lmx1bO88609 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
Lmx1bO88609 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Lmx1bO88609 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Lmx1bO88609 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC13.04□□□□□ -0.32
Lmx1bO88609 Gm37912-201ENSMUST00000191895 3076 ntBASIC13.04□□□□□ -0.32
Lmx1bO88609 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Lmx1bO88609 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Gm21009-201ENSMUST00000197169 1669 ntBASIC13.03□□□□□ -0.32
Lmx1bO88609 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Gm6539-201ENSMUST00000119157 1064 ntBASIC13.03□□□□□ -0.32
Lmx1bO88609 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 AC125206.2-201ENSMUST00000217454 574 ntBASIC13.03□□□□□ -0.32
Lmx1bO88609 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.03□□□□□ -0.32
Lmx1bO88609 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Lmx1bO88609 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Lmx1bO88609 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
Lmx1bO88609 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lmx1bO88609 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lmx1bO88609 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lmx1bO88609 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lmx1bO88609 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lmx1bO88609 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Lmx1bO88609 Gm12620-201ENSMUST00000119791 1986 ntBASIC13.02□□□□□ -0.32
Lmx1bO88609 Gm12612-201ENSMUST00000140182 1986 ntBASIC13.02□□□□□ -0.32
Lmx1bO88609 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Lmx1bO88609 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.33
Lmx1bO88609 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Lmx1bO88609 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Lmx1bO88609 Gm25144-201ENSMUST00000179561 110 ntBASIC13.02□□□□□ -0.33
Lmx1bO88609 Gm25352-201ENSMUST00000179815 110 ntBASIC13.02□□□□□ -0.33
Lmx1bO88609 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Gm6944-201ENSMUST00000182449 1006 ntBASIC13.02□□□□□ -0.33
Lmx1bO88609 Mir6977-201ENSMUST00000184960 64 ntBASIC13.02□□□□□ -0.33
Lmx1bO88609 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC13.02□□□□□ -0.33
Lmx1bO88609 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Lmx1bO88609 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.02□□□□□ -0.33
Lmx1bO88609 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Lmx1bO88609 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Gm27533-201ENSMUST00000183800 152 ntBASIC13.01□□□□□ -0.33
Lmx1bO88609 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC13.01□□□□□ -0.33
Lmx1bO88609 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lmx1bO88609 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms