Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Gm43205-201ENSMUST00000198622 1968 ntBASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Gm26308-201ENSMUST00000157768 69 ntBASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 CT025555.1-201ENSMUST00000225901 1217 ntBASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Trim3Q9R1R2 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Gm16026-204ENSMUST00000162652 683 ntBASIC13.54□□□□□ -0.24
Trim3Q9R1R2 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim3Q9R1R2 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Gm15593-201ENSMUST00000122085 1008 ntBASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim3Q9R1R2 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms