Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.23□□□□□ -0.13
Lima1Q9ERG0 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Lima1Q9ERG0 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Gm12350-201ENSMUST00000121208 462 ntBASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lima1Q9ERG0 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Gm27628-201ENSMUST00000184911 107 ntBASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Gm42670-201ENSMUST00000201816 1292 ntBASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Lima1Q9ERG0 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lima1Q9ERG0 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Lima1Q9ERG0 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lima1Q9ERG0 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lima1Q9ERG0 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lima1Q9ERG0 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.2□□□□□ -0.14
Lima1Q9ERG0 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lima1Q9ERG0 AC084391.1-201ENSMUST00000200651 141 ntBASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 71.7 ms