Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm22065-201ENSMUST00000103753 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm22066-201ENSMUST00000103761 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24932-201ENSMUST00000103763 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24115-201ENSMUST00000103799 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm22190-201ENSMUST00000103827 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm22191-201ENSMUST00000103831 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24721-201ENSMUST00000103849 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm28018-201ENSMUST00000103869 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm26399-201ENSMUST00000103937 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm25349-201ENSMUST00000177728 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm23616-201ENSMUST00000177797 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm25871-201ENSMUST00000177816 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24752-201ENSMUST00000178240 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24496-201ENSMUST00000178287 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm25649-201ENSMUST00000178476 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm25548-201ENSMUST00000178681 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm23147-201ENSMUST00000178841 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm26095-201ENSMUST00000179270 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm22171-201ENSMUST00000179283 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm23936-201ENSMUST00000179354 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm22619-201ENSMUST00000179516 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm25255-201ENSMUST00000179579 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24755-201ENSMUST00000179691 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm26506-201ENSMUST00000179692 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm25086-201ENSMUST00000179931 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm23243-201ENSMUST00000180047 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24659-201ENSMUST00000180212 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm24169-201ENSMUST00000180244 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm23689-201ENSMUST00000180354 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm27359-201ENSMUST00000184153 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm27785-201ENSMUST00000184268 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm27466-201ENSMUST00000184396 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gm27703-201ENSMUST00000184836 110 ntBASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Cdc40Q9DC48 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Gm13464-201ENSMUST00000119418 935 ntBASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Gm12134-201ENSMUST00000122109 520 ntBASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdc40Q9DC48 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms