Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Gm15693-201ENSMUST00000120470 637 ntBASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Gm29541-201ENSMUST00000191351 678 ntBASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Gm37230-201ENSMUST00000194491 818 ntBASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps28Q9D1C8 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.75□□□□□ -0.05
Vps28Q9D1C8 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Gm18766-201ENSMUST00000189811 808 ntBASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.75□□□□□ -0.05
Vps28Q9D1C8 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps28Q9D1C8 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Gm13823-201ENSMUST00000119930 345 ntBASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Auts2-212ENSMUST00000178555 309 ntBASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms