Protein–RNA interactions for Protein: Q9CQ71

Rpa3, Replication protein A 14 kDa subunit, mousemouse

Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa3Q9CQ71 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rpa3Q9CQ71 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.23■□□□□ 0.03
Rpa3Q9CQ71 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rpa3Q9CQ71 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.23■□□□□ 0.03
Rpa3Q9CQ71 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.23■□□□□ 0.03
Rpa3Q9CQ71 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rpa3Q9CQ71 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Gm43575-201ENSMUST00000196420 516 ntBASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rpa3Q9CQ71 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm25287-201ENSMUST00000103846 110 ntBASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm22918-201ENSMUST00000103855 110 ntBASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.21■□□□□ 0.03
Rpa3Q9CQ71 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rpa3Q9CQ71 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rpa3Q9CQ71 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rpa3Q9CQ71 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rpa3Q9CQ71 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rpa3Q9CQ71 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rpa3Q9CQ71 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Gm23935-201ENSMUST00000102303 57 ntBASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Gm24270-201ENSMUST00000102326 57 ntBASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Gm24245-201ENSMUST00000157318 57 ntBASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Gm43474-201ENSMUST00000196415 774 ntBASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rpa3Q9CQ71 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms