Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm43205-201ENSMUST00000198622 1968 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Brf1Q8CFK2 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC17.39■□□□□ 0.38
Brf1Q8CFK2 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC17.39■□□□□ 0.38
Brf1Q8CFK2 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Gm14701-201ENSMUST00000117156 348 ntBASIC17.39■□□□□ 0.37
Brf1Q8CFK2 AC123645.1-201ENSMUST00000228469 605 ntBASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Brf1Q8CFK2 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Gm13823-201ENSMUST00000119930 345 ntBASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Gm18766-201ENSMUST00000189811 808 ntBASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Gm5779-201ENSMUST00000218467 910 ntBASIC17.38■□□□□ 0.37
Brf1Q8CFK2 AC140397.2-201ENSMUST00000224213 834 ntBASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Brf1Q8CFK2 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Gm6539-201ENSMUST00000119157 1064 ntBASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Gm10253-201ENSMUST00000194270 940 ntBASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Gm7774-201ENSMUST00000200064 533 ntBASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Gm5867-201ENSMUST00000063197 592 ntBASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Brf1Q8CFK2 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms