Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Gm27466-201ENSMUST00000184396 110 ntBASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Gm27703-201ENSMUST00000184836 110 ntBASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC17.01■□□□□ 0.31
Nup88Q8CEC0 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Fgf17-202ENSMUST00000227123 1336 ntBASIC17■□□□□ 0.31
Nup88Q8CEC0 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17■□□□□ 0.31
Nup88Q8CEC0 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 CT025626.1-201ENSMUST00000223735 1455 ntBASIC17■□□□□ 0.31
Nup88Q8CEC0 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Mir449b-201ENSMUST00000104833 80 ntBASIC17■□□□□ 0.31
Nup88Q8CEC0 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
Nup88Q8CEC0 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17■□□□□ 0.31
Nup88Q8CEC0 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC17■□□□□ 0.31
Nup88Q8CEC0 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC17■□□□□ 0.31
Nup88Q8CEC0 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC17■□□□□ 0.31
Nup88Q8CEC0 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
Nup88Q8CEC0 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
Nup88Q8CEC0 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nup88Q8CEC0 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC17■□□□□ 0.31
Nup88Q8CEC0 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 AC159649.2-201ENSMUST00000222984 3223 ntBASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.99■□□□□ 0.31
Nup88Q8CEC0 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 CT030684.1-201ENSMUST00000227292 914 ntBASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Gm10154-201ENSMUST00000084445 354 ntBASIC16.99■□□□□ 0.31
Nup88Q8CEC0 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Nup88Q8CEC0 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Gm25287-201ENSMUST00000103846 110 ntBASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Gm22918-201ENSMUST00000103855 110 ntBASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Nup88Q8CEC0 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms