Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Mir7023-201ENSMUST00000185093 64 ntBASIC16.97■□□□□ 0.31
Trim56Q80VI1 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 AA619741-201ENSMUST00000195095 646 ntBASIC16.97■□□□□ 0.31
Trim56Q80VI1 Gm43703-201ENSMUST00000200523 763 ntBASIC16.97■□□□□ 0.31
Trim56Q80VI1 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gm45667-201ENSMUST00000210380 1316 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Ssr1-204ENSMUST00000225319 1610 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gm14767-201ENSMUST00000121559 586 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gm27321-201ENSMUST00000185021 205 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gm46209-201ENSMUST00000217912 553 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gm37411-201ENSMUST00000194180 2282 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.96■□□□□ 0.31
Trim56Q80VI1 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim56Q80VI1 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Trim56Q80VI1 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.96■□□□□ 0.3
Trim56Q80VI1 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim56Q80VI1 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim56Q80VI1 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim56Q80VI1 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Gm27989-201ENSMUST00000184721 107 ntBASIC16.95■□□□□ 0.3
Trim56Q80VI1 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.95■□□□□ 0.3
Trim56Q80VI1 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Trim56Q80VI1 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim56Q80VI1 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Cd63-ps-201ENSMUST00000145417 875 ntBASIC16.94■□□□□ 0.3
Trim56Q80VI1 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms