Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Rnf220Q6PDX6 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rnf220Q6PDX6 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Gm13836-201ENSMUST00000121159 501 ntBASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rnf220Q6PDX6 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Gm15165-201ENSMUST00000118140 502 ntBASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rnf220Q6PDX6 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms