Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Six3Q62233 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC14.07□□□□□ -0.16
Six3Q62233 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Six3Q62233 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Six3Q62233 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
Six3Q62233 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC14.07□□□□□ -0.16
Six3Q62233 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.07□□□□□ -0.16
Six3Q62233 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
Six3Q62233 Gm9727-201ENSMUST00000161387 555 ntBASIC14.07□□□□□ -0.16
Six3Q62233 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC14.07□□□□□ -0.16
Six3Q62233 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC14.07□□□□□ -0.16
Six3Q62233 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.07□□□□□ -0.16
Six3Q62233 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.07□□□□□ -0.16
Six3Q62233 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Six3Q62233 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.07□□□□□ -0.16
Six3Q62233 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Six3Q62233 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.06□□□□□ -0.16
Six3Q62233 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Six3Q62233 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.06□□□□□ -0.16
Six3Q62233 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.06□□□□□ -0.16
Six3Q62233 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC14.06□□□□□ -0.16
Six3Q62233 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.06□□□□□ -0.16
Six3Q62233 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.06□□□□□ -0.16
Six3Q62233 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Six3Q62233 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.06□□□□□ -0.16
Six3Q62233 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Six3Q62233 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.06□□□□□ -0.16
Six3Q62233 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Six3Q62233 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.05□□□□□ -0.16
Six3Q62233 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Six3Q62233 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Six3Q62233 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Six3Q62233 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Six3Q62233 Rpph1-201ENSMUST00000175096 319 ntBASIC14.05□□□□□ -0.16
Six3Q62233 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC14.05□□□□□ -0.16
Six3Q62233 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 AC174742.1-201ENSMUST00000218272 304 ntBASIC14.05□□□□□ -0.16
Six3Q62233 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Six3Q62233 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Six3Q62233 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Six3Q62233 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Six3Q62233 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.04□□□□□ -0.16
Six3Q62233 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Six3Q62233 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Six3Q62233 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms