Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm15678-201ENSMUST00000117573 960 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm4804-201ENSMUST00000182234 999 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm6283-201ENSMUST00000182369 1000 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm6266-201ENSMUST00000203844 806 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm18062-201ENSMUST00000208020 547 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm18055-201ENSMUST00000208254 547 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 CT030657.3-201ENSMUST00000222707 1200 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Mir7654-201ENSMUST00000185082 70 ntBASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Gm28911-201ENSMUST00000188837 117 ntBASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Gm7558-201ENSMUST00000193221 1165 ntBASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Gm8131-201ENSMUST00000213783 1570 ntBASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3aQ3ULJ3 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
Upf3aQ3ULJ3 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Gm5035-201ENSMUST00000215581 927 ntBASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Upf3aQ3ULJ3 AC154527.2-201ENSMUST00000225256 1466 ntBASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms