Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm5781-201ENSMUST00000219792 443 ntBASIC21.65■■□□□ 1.06
Col17a1Q07563 CT025694.1-201ENSMUST00000226188 934 ntBASIC21.65■■□□□ 1.06
Col17a1Q07563 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col17a1Q07563 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col17a1Q07563 Gm38144-201ENSMUST00000192790 465 ntBASIC21.64■■□□□ 1.06
Col17a1Q07563 Gm37042-201ENSMUST00000193816 581 ntBASIC21.64■■□□□ 1.06
Col17a1Q07563 AC073947.2-201ENSMUST00000215888 1130 ntBASIC21.64■■□□□ 1.06
Col17a1Q07563 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col17a1Q07563 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col17a1Q07563 Gm24447-201ENSMUST00000083977 338 ntBASIC21.64■■□□□ 1.06
Col17a1Q07563 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC21.64■■□□□ 1.06
Col17a1Q07563 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col17a1Q07563 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col17a1Q07563 Gm18244-201ENSMUST00000219747 1566 ntBASIC21.64■■□□□ 1.06
Col17a1Q07563 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col17a1Q07563 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col17a1Q07563 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
Col17a1Q07563 AC168058.1-201ENSMUST00000219521 2282 ntBASIC21.64■■□□□ 1.05
Col17a1Q07563 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC21.64■■□□□ 1.05
Col17a1Q07563 Gm13408-201ENSMUST00000119822 798 ntBASIC21.64■■□□□ 1.05
Col17a1Q07563 Gm13935-201ENSMUST00000121859 798 ntBASIC21.64■■□□□ 1.05
Col17a1Q07563 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC21.64■■□□□ 1.05
Col17a1Q07563 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC21.64■■□□□ 1.05
Col17a1Q07563 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC21.64■■□□□ 1.05
Col17a1Q07563 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col17a1Q07563 Gm8385-201ENSMUST00000058999 643 ntBASIC21.64■■□□□ 1.05
Col17a1Q07563 Gm10179-201ENSMUST00000086233 688 ntBASIC21.64■■□□□ 1.05
Col17a1Q07563 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC21.63■■□□□ 1.05
Col17a1Q07563 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col17a1Q07563 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col17a1Q07563 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC21.63■■□□□ 1.05
Col17a1Q07563 Ntrk2-205ENSMUST00000224402 2284 ntBASIC21.63■■□□□ 1.05
Col17a1Q07563 AC139054.1-201ENSMUST00000226898 1598 ntBASIC21.63■■□□□ 1.05
Col17a1Q07563 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col17a1Q07563 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col17a1Q07563 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col17a1Q07563 Gm23270-201ENSMUST00000104055 131 ntBASIC21.63■■□□□ 1.05
Col17a1Q07563 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Col17a1Q07563 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col17a1Q07563 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC21.63■■□□□ 1.05
Col17a1Q07563 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC21.63■■□□□ 1.05
Col17a1Q07563 CT573086.1-201ENSMUST00000227202 1074 ntBASIC21.63■■□□□ 1.05
Col17a1Q07563 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col17a1Q07563 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Col17a1Q07563 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Col17a1Q07563 Gm42471-201ENSMUST00000201457 1865 ntBASIC21.63■■□□□ 1.05
Col17a1Q07563 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
Col17a1Q07563 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Gm5778-201ENSMUST00000171003 1072 ntBASIC21.62■■□□□ 1.05
Col17a1Q07563 Gm29155-201ENSMUST00000185910 269 ntBASIC21.62■■□□□ 1.05
Col17a1Q07563 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Col17a1Q07563 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Gm6580-201ENSMUST00000117504 1357 ntBASIC21.62■■□□□ 1.05
Col17a1Q07563 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col17a1Q07563 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC21.62■■□□□ 1.05
Col17a1Q07563 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col17a1Q07563 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Col17a1Q07563 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col17a1Q07563 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col17a1Q07563 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col17a1Q07563 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
Col17a1Q07563 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms