Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.43□□□□□ -0.42
Nkx3-1P97436 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Gm22189-201ENSMUST00000103822 86 ntBASIC12.42□□□□□ -0.42
Nkx3-1P97436 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 AA619741-201ENSMUST00000195095 646 ntBASIC12.42□□□□□ -0.42
Nkx3-1P97436 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 AC156016.3-201ENSMUST00000228623 344 ntBASIC12.42□□□□□ -0.42
Nkx3-1P97436 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Gm6180-201ENSMUST00000065243 498 ntBASIC12.42□□□□□ -0.42
Nkx3-1P97436 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nkx3-1P97436 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC12.41□□□□□ -0.42
Nkx3-1P97436 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC12.41□□□□□ -0.42
Nkx3-1P97436 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Gm18018-201ENSMUST00000198273 408 ntBASIC12.41□□□□□ -0.42
Nkx3-1P97436 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.41□□□□□ -0.42
Nkx3-1P97436 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Nkx3-1P97436 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.4□□□□□ -0.42
Nkx3-1P97436 Gm12091-201ENSMUST00000146791 830 ntBASIC12.4□□□□□ -0.42
Nkx3-1P97436 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.4□□□□□ -0.42
Nkx3-1P97436 Gm18187-201ENSMUST00000196476 984 ntBASIC12.4□□□□□ -0.42
Nkx3-1P97436 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nkx3-1P97436 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms