Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC18.71■□□□□ 0.59
Col18a1P39061 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC18.71■□□□□ 0.59
Col18a1P39061 Gm37489-201ENSMUST00000191883 159 ntBASIC18.71■□□□□ 0.59
Col18a1P39061 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col18a1P39061 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC18.71■□□□□ 0.58
Col18a1P39061 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Col18a1P39061 Gm15770-201ENSMUST00000117498 584 ntBASIC18.7■□□□□ 0.58
Col18a1P39061 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC18.7■□□□□ 0.58
Col18a1P39061 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC18.7■□□□□ 0.58
Col18a1P39061 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Col18a1P39061 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
Col18a1P39061 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Gm11222-201ENSMUST00000119005 738 ntBASIC18.7■□□□□ 0.58
Col18a1P39061 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC18.7■□□□□ 0.58
Col18a1P39061 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC18.7■□□□□ 0.58
Col18a1P39061 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
Col18a1P39061 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC18.7■□□□□ 0.58
Col18a1P39061 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col18a1P39061 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Col18a1P39061 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Gm12012-201ENSMUST00000118857 1066 ntBASIC18.69■□□□□ 0.58
Col18a1P39061 Gm2260-201ENSMUST00000184965 657 ntBASIC18.69■□□□□ 0.58
Col18a1P39061 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Col18a1P39061 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC18.69■□□□□ 0.58
Col18a1P39061 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Gm17330-201ENSMUST00000221047 165 ntBASIC18.69■□□□□ 0.58
Col18a1P39061 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Gm18630-201ENSMUST00000222109 1397 ntBASIC18.69■□□□□ 0.58
Col18a1P39061 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col18a1P39061 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Gm3809-201ENSMUST00000180973 1006 ntBASIC18.68■□□□□ 0.58
Col18a1P39061 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Col18a1P39061 AC174678.1-201ENSMUST00000228007 2749 ntBASIC18.68■□□□□ 0.58
Col18a1P39061 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col18a1P39061 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col18a1P39061 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Gm7857-201ENSMUST00000117957 358 ntBASIC18.68■□□□□ 0.58
Col18a1P39061 Gm4909-201ENSMUST00000118749 794 ntBASIC18.68■□□□□ 0.58
Col18a1P39061 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col18a1P39061 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC18.68■□□□□ 0.58
Col18a1P39061 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Col18a1P39061 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC18.67■□□□□ 0.58
Col18a1P39061 Gm24548-201ENSMUST00000158650 108 ntBASIC18.67■□□□□ 0.58
Col18a1P39061 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC18.67■□□□□ 0.58
Col18a1P39061 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col18a1P39061 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Col18a1P39061 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col18a1P39061 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col18a1P39061 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col18a1P39061 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC18.67■□□□□ 0.58
Col18a1P39061 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms