Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC13.68□□□□□ -0.22
Msx1P13297 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Msx1P13297 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.68□□□□□ -0.22
Msx1P13297 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Gm42934-201ENSMUST00000196920 1345 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Gm8096-201ENSMUST00000209921 1591 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Gm14719-201ENSMUST00000121891 340 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Gm16215-201ENSMUST00000161990 637 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Msx1P13297 Gm16026-204ENSMUST00000162652 683 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Msx1P13297 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC13.67□□□□□ -0.22
Msx1P13297 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Msx1P13297 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.67□□□□□ -0.22
Msx1P13297 D530018E20Rik-201ENSMUST00000205107 958 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Gm44855-201ENSMUST00000205725 362 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Msx1P13297 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Msx1P13297 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 AC131743.5-201ENSMUST00000220775 1618 ntBASIC13.67□□□□□ -0.22
Msx1P13297 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msx1P13297 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Msx1P13297 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Msx1P13297 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC13.66□□□□□ -0.22
Msx1P13297 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Msx1P13297 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Msx1P13297 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Gm12813-201ENSMUST00000119615 902 ntBASIC13.66□□□□□ -0.22
Msx1P13297 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.66□□□□□ -0.22
Msx1P13297 Gm8116-201ENSMUST00000182917 1201 ntBASIC13.66□□□□□ -0.22
Msx1P13297 Gm18351-201ENSMUST00000188646 883 ntBASIC13.66□□□□□ -0.22
Msx1P13297 Gm18187-201ENSMUST00000196476 984 ntBASIC13.66□□□□□ -0.22
Msx1P13297 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC13.66□□□□□ -0.22
Msx1P13297 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Gm9794-201ENSMUST00000202370 423 ntBASIC13.66□□□□□ -0.22
Msx1P13297 Olfr812-202ENSMUST00000203571 1232 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Msx1P13297 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msx1P13297 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms