Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.99■□□□□ 0.31
Col3a1P08121 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Gm12960-201ENSMUST00000120017 1066 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Mir1938-201ENSMUST00000158746 100 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col3a1P08121 Gm24420-201ENSMUST00000176676 59 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Gm8602-201ENSMUST00000184045 607 ntBASIC16.99■□□□□ 0.31
Col3a1P08121 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC16.99■□□□□ 0.31
Col3a1P08121 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC16.99■□□□□ 0.31
Col3a1P08121 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.98■□□□□ 0.31
Col3a1P08121 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.98■□□□□ 0.31
Col3a1P08121 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 AC126549.2-201ENSMUST00000223997 1976 ntBASIC16.98■□□□□ 0.31
Col3a1P08121 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col3a1P08121 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC16.98■□□□□ 0.31
Col3a1P08121 Gm12134-201ENSMUST00000122109 520 ntBASIC16.98■□□□□ 0.31
Col3a1P08121 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC16.98■□□□□ 0.31
Col3a1P08121 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Col3a1P08121 Gm18307-201ENSMUST00000206864 949 ntBASIC16.98■□□□□ 0.31
Col3a1P08121 AC156560.2-201ENSMUST00000221232 264 ntBASIC16.98■□□□□ 0.31
Col3a1P08121 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC16.98■□□□□ 0.31
Col3a1P08121 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Col3a1P08121 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.98■□□□□ 0.31
Col3a1P08121 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Col3a1P08121 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Col3a1P08121 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col3a1P08121 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Col3a1P08121 AC122335.2-201ENSMUST00000213901 6181 ntBASIC16.97■□□□□ 0.31
Col3a1P08121 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
Col3a1P08121 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.97■□□□□ 0.31
Col3a1P08121 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
Col3a1P08121 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Col3a1P08121 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC16.97■□□□□ 0.31
Col3a1P08121 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Col3a1P08121 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC16.97■□□□□ 0.31
Col3a1P08121 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC16.97■□□□□ 0.31
Col3a1P08121 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC16.97■□□□□ 0.31
Col3a1P08121 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.97■□□□□ 0.31
Col3a1P08121 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col3a1P08121 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC16.96■□□□□ 0.31
Col3a1P08121 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Col3a1P08121 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC16.96■□□□□ 0.31
Col3a1P08121 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Gm11557-201ENSMUST00000120200 1008 ntBASIC16.96■□□□□ 0.31
Col3a1P08121 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC16.96■□□□□ 0.31
Col3a1P08121 Gm8927-201ENSMUST00000181978 981 ntBASIC16.96■□□□□ 0.31
Col3a1P08121 Gm3222-201ENSMUST00000071282 990 ntBASIC16.96■□□□□ 0.31
Col3a1P08121 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Col3a1P08121 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
Col3a1P08121 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Col3a1P08121 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col3a1P08121 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms