Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC14.11□□□□□ -0.15
Cbx4O55187 Ndufaf2-202ENSMUST00000223734 556 ntBASIC14.11□□□□□ -0.15
Cbx4O55187 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Cbx4O55187 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Cbx4O55187 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC14.11□□□□□ -0.15
Cbx4O55187 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Cbx4O55187 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cbx4O55187 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cbx4O55187 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Gm5648-201ENSMUST00000122244 1587 ntBASIC14.1□□□□□ -0.15
Cbx4O55187 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cbx4O55187 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Cbx4O55187 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.1□□□□□ -0.15
Cbx4O55187 Gm6736-201ENSMUST00000166583 948 ntBASIC14.1□□□□□ -0.15
Cbx4O55187 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC14.1□□□□□ -0.15
Cbx4O55187 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Gm5628-201ENSMUST00000222318 1049 ntBASIC14.1□□□□□ -0.15
Cbx4O55187 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC14.1□□□□□ -0.15
Cbx4O55187 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
Cbx4O55187 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Cbx4O55187 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cbx4O55187 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm23935-201ENSMUST00000102303 57 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Gm24270-201ENSMUST00000102326 57 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC14.09□□□□□ -0.15
Cbx4O55187 Rprl2-201ENSMUST00000157150 290 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Gm24245-201ENSMUST00000157318 57 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 AC166341.4-201ENSMUST00000220625 123 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 AC155252.2-201ENSMUST00000226946 680 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm42934-201ENSMUST00000196920 1345 ntBASIC14.09□□□□□ -0.15
Cbx4O55187 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cbx4O55187 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Cbx4O55187 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cbx4O55187 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cbx4O55187 Gm6756-201ENSMUST00000180647 1620 ntBASIC14.08□□□□□ -0.15
Cbx4O55187 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cbx4O55187 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Cbx4O55187 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Cbx4O55187 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Cbx4O55187 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cbx4O55187 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cbx4O55187 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cbx4O55187 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC14.08□□□□□ -0.16
Cbx4O55187 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cbx4O55187 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cbx4O55187 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms